LOC_Os07g12320.1

Description : transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0011507 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011507_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g12320.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g12320.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_214

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	Pfam	187	210
IPR001680	WD40_rpt	Pfam	222	251
IPR001680	WD40_rpt	SMART	79	118
IPR001680	WD40_rpt	SMART	214	251
IPR001680	WD40_rpt	SMART	255	298
IPR001680	WD40_rpt	SMART	36	76
IPR001680	WD40_rpt	SMART	169	210
IPR001680	WD40_rpt	SMART	124	166
IPR001680	WD40_rpt	SMART	301	339
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	219	433
IPR001680	WD40_rpt	ProSiteProfiles	177	219
IPR018983	U3_snoRNA-assocProt_15_C	Pfam	385	526
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	47	337
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	20	218

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os07g12320.1

Expression Profile

Co-expression Networks

Functional Annotation