Sevir.1G148500.1

Description : binding

Gene families : OG_01_0002502 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002502_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G148500.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G148500.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_20

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016570	histone modification	ISM	GOs from InterProScan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	185	346
IPR019734	TPR_repeat	ProSiteProfiles	722	755
IPR019734	TPR_repeat	SMART	207	240
IPR019734	TPR_repeat	SMART	458	487
IPR019734	TPR_repeat	SMART	352	385
IPR019734	TPR_repeat	SMART	566	599
IPR019734	TPR_repeat	SMART	127	160
IPR019734	TPR_repeat	SMART	315	348
IPR019734	TPR_repeat	SMART	758	791
IPR019734	TPR_repeat	SMART	168	205
IPR019734	TPR_repeat	SMART	722	755
IPR019734	TPR_repeat	SMART	386	419
IPR019734	TPR_repeat	SMART	683	716
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	184	447
IPR019734	TPR_repeat	ProSiteProfiles	207	240
IPR019734	TPR_repeat	Pfam	725	749
IPR031101	Ctr9	PANTHER	1	1052
IPR011990	TPR-like_helical_dom_sf	Gene3D	18	184
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	83	178
IPR019734	TPR_repeat	Pfam	316	343
IPR019734	TPR_repeat	Pfam	459	485
IPR019734	TPR_repeat	Pfam	392	419
IPR011990	TPR-like_helical_dom_sf	Gene3D	512	832
IPR019734	TPR_repeat	ProSiteProfiles	386	419
IPR011990	TPR-like_helical_dom_sf	Gene3D	347	494
IPR019734	TPR_repeat	ProSiteProfiles	352	385
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	465	799

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.1G148500.1

Expression Profile

Co-expression Networks

Functional Annotation