LOC_Os07g13540.1

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_01_0018339 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018339_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g13540.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g13540.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_19
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_143

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	312	346
IPR032867	DYW_dom	Pfam	586	710
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	413	447
IPR011990	TPR-like_helical_dom_sf	Gene3D	384	611
IPR002885	Pentatricopeptide_rpt	Pfam	208	249
IPR045215	PPR_prot_At1g15510	PANTHER	50	700
IPR002885	Pentatricopeptide_rpt	Pfam	148	176
IPR002885	Pentatricopeptide_rpt	Pfam	416	442
IPR002885	Pentatricopeptide_rpt	Pfam	78	106
IPR002885	Pentatricopeptide_rpt	Pfam	487	510
IPR002885	Pentatricopeptide_rpt	Pfam	179	203
IPR002885	Pentatricopeptide_rpt	Pfam	388	410
IPR002885	Pentatricopeptide_rpt	Pfam	283	303
IPR002885	Pentatricopeptide_rpt	Pfam	315	344
IPR002885	Pentatricopeptide_rpt	Pfam	455	478
IPR002885	Pentatricopeptide_rpt	TIGRFAM	315	347
IPR002885	Pentatricopeptide_rpt	TIGRFAM	416	449
IPR002885	Pentatricopeptide_rpt	TIGRFAM	454	484
IPR002885	Pentatricopeptide_rpt	TIGRFAM	148	176
IPR011990	TPR-like_helical_dom_sf	Gene3D	257	383
IPR011990	TPR-like_helical_dom_sf	Gene3D	15	175
IPR011990	TPR-like_helical_dom_sf	Gene3D	176	256
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	75	109
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	146	180
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	275	440
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	208	242

No CAZYmes available for this sequence

External Links

No external refs found!