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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0014390 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014390_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g19400.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g19400.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_196 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 376 | 409 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 212 | 240 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 141 | 173 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 550 | 571 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 477 | 510 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 240 | 273 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 275 | 307 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 273 | 307 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 475 | 509 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 374 | 408 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 493 | 652 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 207 | 237 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 448 | 474 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 477 | 507 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 549 | 571 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 348 | 371 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 516 | 538 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 238 | 272 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 137 | 171 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 141 | 184 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 373 | 420 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 237 | 280 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 335 | 429 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 115 | 199 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 202 | 334 |
No CAZYmes available for this sequence
| No external refs found! |