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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0009547 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009547_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g28900.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g28900.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_325 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_143 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 404 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 577 | 611 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 507 | 541 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 150 | 184 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 681 | 715 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 476 | 508 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 822 | 855 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 266 | 299 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 579 | 612 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 545 | 578 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 616 | 647 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 301 | 335 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 153 | 186 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 719 | 752 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 75 | 211 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 255 | 347 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 348 | 449 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 299 | 345 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 718 | 760 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 819 | 858 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 678 | 790 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 612 | 646 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 264 | 298 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 819 | 853 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 716 | 750 |
| IPR033443 | PPR_long | Pfam | 488 | 595 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 651 | 677 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 616 | 642 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 683 | 712 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 441 | 462 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 266 | 296 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 542 | 576 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 603 | 677 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 114 | 148 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 299 | 333 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 450 | 602 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 791 | 896 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 472 | 506 |
No CAZYmes available for this sequence
| No external refs found! |