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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0011532 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011532_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g30930.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g30930.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_297 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_179 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 256 | 286 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 399 | 433 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 364 | 398 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 469 | 503 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 506 | 539 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 401 | 434 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 332 | 364 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 367 | 399 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 471 | 501 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 438 | 470 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 223 | 256 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 258 | 292 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 127 | 306 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 520 | 648 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 329 | 363 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 416 | 519 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 307 | 415 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 216 | 247 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 429 | 461 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 434 | 468 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 539 | 573 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 580 | 603 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 332 | 361 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 364 | 412 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 255 | 302 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 472 | 517 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 504 | 538 |
No CAZYmes available for this sequence
| No external refs found! |