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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0015543 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015543_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g32900.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g32900.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_476 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 354 | 388 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 265 | 696 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 448 | 520 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 591 | 660 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 521 | 590 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 661 | 736 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 669 | 703 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 390 | 437 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 563 | 611 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 283 | 327 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 494 | 542 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 633 | 678 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 252 | 282 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 564 | 598 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 321 | 355 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 531 | 564 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 357 | 389 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 426 | 460 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 391 | 424 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 461 | 494 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 602 | 635 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 496 | 530 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 637 | 669 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 672 | 700 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 286 | 319 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 566 | 600 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 255 | 279 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 252 | 279 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 455 | 486 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 634 | 668 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 389 | 423 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 529 | 563 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 335 | 446 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 284 | 318 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 424 | 458 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 459 | 493 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 357 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 599 | 633 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 226 | 334 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 319 | 353 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 494 | 528 |
No CAZYmes available for this sequence
| No external refs found! |