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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_01_0015827 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015827_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G284400.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G284400.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_65 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 302 | 332 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 333 | 367 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 434 | 468 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 171 | 199 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 335 | 368 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 306 | 329 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 202 | 236 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 437 | 469 |
| IPR032867 | DYW_dom | Pfam | 609 | 731 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 508 | 532 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 143 | 165 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 11 | 126 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 127 | 254 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 386 | 487 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 255 | 385 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 306 | 329 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 200 | 234 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 169 | 199 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 434 | 481 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 332 | 380 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 199 | 246 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 488 | 648 |
No CAZYmes available for this sequence
| No external refs found! |