LOC_Os07g38090.2

Description : CCCH-type zinc finger protein with ARM repeat domain

Gene families : OG_01_0008081 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008081_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g38090.2
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g38090.2
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_272
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002110	Ankyrin_rpt	ProSiteProfiles	104	139
IPR000571	Znf_CCCH	ProSiteProfiles	274	302
IPR002110	Ankyrin_rpt	SMART	68	99
IPR002110	Ankyrin_rpt	SMART	104	136
IPR036770	Ankyrin_rpt-contain_sf	Gene3D	21	153
IPR036770	Ankyrin_rpt-contain_sf	SUPERFAMILY	66	147
IPR036855	Znf_CCCH_sf	SUPERFAMILY	275	303
IPR002110	Ankyrin_rpt	Pfam	68	136
IPR000571	Znf_CCCH	Pfam	278	300
IPR045234	Unkempt-like	PANTHER	20	656
IPR000571	Znf_CCCH	SMART	310	333
IPR000571	Znf_CCCH	SMART	274	301
IPR002110	Ankyrin_rpt	ProSiteProfiles	68	100

No CAZYmes available for this sequence

External Links

No external refs found!