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  5. LOC_Os07g38430.1

LOC_Os07g38430.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0012002 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012002_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g38430.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g38430.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_291
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_196


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt Pfam 60 95
IPR001680 WD40_rpt Pfam 165 203
IPR001680 WD40_rpt Pfam 23 49
IPR001680 WD40_rpt Pfam 123 161
IPR001680 WD40_rpt Pfam 251 291
IPR001680 WD40_rpt Pfam 297 334
IPR001680 WD40_rpt ProSiteProfiles 21 62
IPR019775 WD40_repeat_CS ProSitePatterns 82 96
IPR019775 WD40_repeat_CS ProSitePatterns 148 162
IPR001680 WD40_rpt ProSiteProfiles 274 300
IPR001680 WD40_rpt ProSiteProfiles 63 97
IPR020472 G-protein_beta_WD-40_rep PRINTS 278 292
IPR020472 G-protein_beta_WD-40_rep PRINTS 82 96
IPR020472 G-protein_beta_WD-40_rep PRINTS 190 204
IPR001680 WD40_rpt SMART 56 95
IPR001680 WD40_rpt SMART 164 203
IPR001680 WD40_rpt SMART 249 291
IPR001680 WD40_rpt SMART 121 161
IPR001680 WD40_rpt SMART 294 335
IPR001680 WD40_rpt SMART 14 53
IPR001680 WD40_rpt SMART 206 246
IPR001680 WD40_rpt ProSiteProfiles 171 212
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 3 338
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 12 334
IPR019775 WD40_repeat_CS ProSitePatterns 278 292
IPR001680 WD40_rpt ProSiteProfiles 128 170

No CAZYmes available for this sequence

No external refs found!