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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0020718 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0020718_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g39910.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g39910.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_334 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_88 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 184 | 338 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 501 | 535 |
| IPR032867 | DYW_dom | Pfam | 674 | 798 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 399 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 266 | 299 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 403 | 434 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 503 | 536 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 371 | 396 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 236 | 259 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 539 | 572 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 233 | 263 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 264 | 298 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 501 | 547 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 266 | 312 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 236 | 259 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 578 | 599 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 371 | 397 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 403 | 431 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 400 | 434 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 498 | 708 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 68 | 182 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 339 | 473 |
No CAZYmes available for this sequence
| No external refs found! |