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  5. LOC_Os07g40030.1

LOC_Os07g40030.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0001826 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001826_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g40030.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g40030.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_291
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_49


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0048188 Set1C/COMPASS complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 249 279
IPR037867 Swd2/WDR82 PANTHER 2 320
IPR001680 WD40_rpt SMART 13 53
IPR001680 WD40_rpt SMART 101 140
IPR001680 WD40_rpt SMART 228 270
IPR001680 WD40_rpt SMART 184 225
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 12 155
IPR001680 WD40_rpt Pfam 238 270
IPR001680 WD40_rpt Pfam 105 140
IPR001680 WD40_rpt ProSiteProfiles 108 140
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 22 307
IPR020472 G-protein_beta_WD-40_rep PRINTS 127 141
IPR020472 G-protein_beta_WD-40_rep PRINTS 257 271
IPR020472 G-protein_beta_WD-40_rep PRINTS 40 54
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 156 321
IPR001680 WD40_rpt ProSiteProfiles 20 62
IPR019775 WD40_repeat_CS ProSitePatterns 257 271

No CAZYmes available for this sequence

No external refs found!