LOC_Os07g41190.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0002398 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002398_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g41190.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g41190.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_256
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_229

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	233	552
IPR001680	WD40_rpt	SMART	508	550
IPR001680	WD40_rpt	SMART	375	413
IPR001680	WD40_rpt	SMART	416	456
IPR001680	WD40_rpt	SMART	244	283
IPR045161	Utp18	PANTHER	36	556
IPR001680	WD40_rpt	ProSiteProfiles	381	422
IPR001680	WD40_rpt	Pfam	257	282
IPR001680	WD40_rpt	Pfam	377	413
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	252	551

No CAZYmes available for this sequence

External Links

No external refs found!