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  5. LOC_Os07g41260.1

LOC_Os07g41260.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0005852 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005852_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g41260.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g41260.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_85


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 400 429
IPR002885 Pentatricopeptide_rpt Pfam 369 393
IPR002885 Pentatricopeptide_rpt Pfam 208 259
IPR002885 Pentatricopeptide_rpt TIGRFAM 365 397
IPR002885 Pentatricopeptide_rpt TIGRFAM 216 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 293 326
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 290 324
IPR011990 TPR-like_helical_dom_sf Gene3D 352 482
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 362 396
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 213 247
IPR002885 Pentatricopeptide_rpt Pfam 297 336
IPR011990 TPR-like_helical_dom_sf Gene3D 79 263
IPR011990 TPR-like_helical_dom_sf Gene3D 264 347

No CAZYmes available for this sequence

No external refs found!