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  5. LOC_Os07g42380.1

LOC_Os07g42380.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0006273 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006273_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g42380.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g42380.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_16
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_161


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 147 250
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 2 146
IPR035979 RBD_domain_sf SUPERFAMILY 55 143
IPR035979 RBD_domain_sf SUPERFAMILY 257 348
IPR003954 RRM_dom_euk SMART 271 340
IPR003954 RRM_dom_euk SMART 151 224
IPR000504 RRM_dom ProSiteProfiles 150 228
IPR000504 RRM_dom ProSiteProfiles 65 139
IPR000504 RRM_dom SMART 271 340
IPR000504 RRM_dom SMART 66 135
IPR000504 RRM_dom SMART 151 224
IPR000504 RRM_dom Pfam 152 222
IPR000504 RRM_dom Pfam 67 132
IPR000504 RRM_dom Pfam 272 338
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 251 348
IPR000504 RRM_dom ProSiteProfiles 270 344
IPR035979 RBD_domain_sf SUPERFAMILY 143 233

No CAZYmes available for this sequence

No external refs found!