1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g46560.1

LOC_Os07g46560.1


Description : Protein with RING/U-box and TRAF-like domains


Gene families : OG_01_0000708 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000708_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g46560.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g46560.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_137


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISM GOs from InterProScan
BP GO:0007275 multicellular organism development ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR013083 Znf_RING/FYVE/PHD Gene3D 47 96
IPR013083 Znf_RING/FYVE/PHD Gene3D 102 162
IPR008974 TRAF-like Gene3D 163 295
IPR018121 7-in-absentia-prot_TRAF-dom Pfam 96 295
IPR001841 Znf_RING ProSiteProfiles 54 90
IPR013010 Znf_SIAH ProSiteProfiles 107 167

No CAZYmes available for this sequence

No external refs found!