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  5. LOC_Os07g46770.1

LOC_Os07g46770.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0013262 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013262_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g46770.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g46770.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_607


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 105 135
IPR037214 TROVE_dom_sf SUPERFAMILY 148 256
IPR011990 TPR-like_helical_dom_sf Gene3D 212 423
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 43 77
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 136 170
IPR002885 Pentatricopeptide_rpt Pfam 103 132
IPR002885 Pentatricopeptide_rpt TIGRFAM 46 74
IPR002885 Pentatricopeptide_rpt TIGRFAM 241 275
IPR002885 Pentatricopeptide_rpt TIGRFAM 138 171
IPR002885 Pentatricopeptide_rpt TIGRFAM 107 137
IPR032867 DYW_dom Pfam 410 533
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 239 273
IPR002885 Pentatricopeptide_rpt Pfam 138 168
IPR002885 Pentatricopeptide_rpt Pfam 47 71
IPR002885 Pentatricopeptide_rpt Pfam 76 100
IPR002885 Pentatricopeptide_rpt Pfam 238 286
IPR011990 TPR-like_helical_dom_sf Gene3D 2 98
IPR011990 TPR-like_helical_dom_sf Gene3D 99 195

No CAZYmes available for this sequence

No external refs found!