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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0017987 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017987_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g47470.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g47470.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_330 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_84 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 142 | 176 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 212 | 246 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 165 | 219 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 247 | 281 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 317 | 351 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 177 | 211 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 492 | 526 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 282 | 316 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 450 | 547 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 382 | 414 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 317 | 363 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 247 | 295 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 469 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 491 | 538 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 457 | 491 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 354 | 387 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 251 | 283 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 284 | 317 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 147 | 178 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 180 | 213 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 494 | 527 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 389 | 422 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 215 | 247 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 320 | 353 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 424 | 458 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 459 | 492 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 387 | 421 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 68 | 202 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 271 | 379 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 422 | 456 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 352 | 386 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 380 | 449 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 203 | 270 |
No CAZYmes available for this sequence
| No external refs found! |