LOC_Os07g47830.1

Description : pectin methylesterase 3

Gene families : OG_01_0001022 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001022_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g47830.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g47830.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_135
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_58

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	ISM	GOs from InterProScan
BP	GO:0042545	cell wall modification	ISM	GOs from InterProScan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0140678	molecular function inhibitor activity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012334	Pectin_lyas_fold	Gene3D	261	578
IPR035513	Invertase/methylesterase_inhib	SUPERFAMILY	67	225
IPR006501	Pectinesterase_inhib_dom	SMART	63	221
IPR000070	Pectinesterase_cat	Pfam	267	564
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	263	577
IPR033131	Pectinesterase_Asp_AS	ProSitePatterns	411	420
IPR006501	Pectinesterase_inhib_dom	TIGRFAM	61	222
IPR035513	Invertase/methylesterase_inhib	Gene3D	63	226
IPR006501	Pectinesterase_inhib_dom	Pfam	67	221

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
CE8	288	580	2.2e-112	267	563

External Links

No external refs found!