LOC_Os07g49210.1

Description : chromatin remodeling 38

Gene families : OG_01_0005930 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005930_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os07g49210.1	No neighbors in network
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os07g49210.1
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_9

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	None	Extended
BP	GO:0031048	regulatory ncRNA-mediated heterochromatin formation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
BP	GO:0140718	facultative heterochromatin formation	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000330	SNF2_N	Pfam	1306	1617
IPR038718	SNF2-like_sf	Gene3D	1273	1564
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	120	220
IPR027417	P-loop_NTPase	Gene3D	1600	1873
IPR014001	Helicase_ATP-bd	ProSiteProfiles	1318	1524
IPR027417	P-loop_NTPase	SUPERFAMILY	1286	1528
IPR044567	CLSY/DRD1	PANTHER	557	1874
IPR001650	Helicase_C	Pfam	1680	1799
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	274	424
IPR006342	FkbM_mtfrase	Pfam	291	446
IPR014001	Helicase_ATP-bd	SMART	1289	1537
IPR001650	Helicase_C	SMART	1713	1799
IPR013216	Methyltransf_11	Pfam	103	181
IPR001650	Helicase_C	ProSiteProfiles	1683	1851
IPR027417	P-loop_NTPase	SUPERFAMILY	1467	1834

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os07g49210.1

Expression Profile

Co-expression Networks

Functional Annotation