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  5. LOC_Os08g01870.1

LOC_Os08g01870.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000170 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000170_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g01870.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g01870.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_41


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 95 129
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 310 344
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 520 554
IPR002885 Pentatricopeptide_rpt TIGRFAM 417 451
IPR002885 Pentatricopeptide_rpt TIGRFAM 347 381
IPR002885 Pentatricopeptide_rpt TIGRFAM 382 415
IPR002885 Pentatricopeptide_rpt TIGRFAM 97 127
IPR002885 Pentatricopeptide_rpt TIGRFAM 168 197
IPR002885 Pentatricopeptide_rpt TIGRFAM 628 661
IPR002885 Pentatricopeptide_rpt TIGRFAM 487 521
IPR002885 Pentatricopeptide_rpt TIGRFAM 454 485
IPR002885 Pentatricopeptide_rpt TIGRFAM 132 167
IPR002885 Pentatricopeptide_rpt TIGRFAM 242 276
IPR002885 Pentatricopeptide_rpt TIGRFAM 313 345
IPR002885 Pentatricopeptide_rpt TIGRFAM 277 311
IPR002885 Pentatricopeptide_rpt TIGRFAM 207 241
IPR002885 Pentatricopeptide_rpt TIGRFAM 522 554
IPR002885 Pentatricopeptide_rpt TIGRFAM 593 616
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 415 449
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 625 659
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 130 165
IPR011990 TPR-like_helical_dom_sf Gene3D 549 618
IPR011990 TPR-like_helical_dom_sf Gene3D 476 548
IPR011990 TPR-like_helical_dom_sf Gene3D 197 269
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 205 239
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 485 519
IPR002885 Pentatricopeptide_rpt Pfam 411 442
IPR002885 Pentatricopeptide_rpt Pfam 515 547
IPR011990 TPR-like_helical_dom_sf Gene3D 270 359
IPR011990 TPR-like_helical_dom_sf Gene3D 360 471
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 660 694
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 380 414
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 240 274
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 275 309
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 345 379
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 166 200
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 450 484
IPR002885 Pentatricopeptide_rpt Pfam 313 341
IPR002885 Pentatricopeptide_rpt Pfam 98 121
IPR011990 TPR-like_helical_dom_sf Gene3D 46 196
IPR011990 TPR-like_helical_dom_sf Gene3D 619 772
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 555 589
IPR002885 Pentatricopeptide_rpt Pfam 628 671
IPR002885 Pentatricopeptide_rpt Pfam 274 311
IPR002885 Pentatricopeptide_rpt Pfam 344 393
IPR002885 Pentatricopeptide_rpt Pfam 554 603
IPR002885 Pentatricopeptide_rpt Pfam 204 253
IPR002885 Pentatricopeptide_rpt Pfam 449 497
IPR002885 Pentatricopeptide_rpt Pfam 132 179

No CAZYmes available for this sequence

No external refs found!