- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0007405 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007405_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g02040.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g02040.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_385 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_113 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 272 | 414 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 108 | 271 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 112 | 140 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 242 | 266 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 345 | 374 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 517 | 541 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 235 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 417 | 440 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 181 | 207 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 315 | 336 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 446 | 473 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 342 | 376 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 443 | 477 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 178 | 212 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 461 | 625 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 446 | 478 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 180 | 210 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 345 | 377 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 211 | 235 |
No CAZYmes available for this sequence
| No external refs found! |