LOC_Os08g02640.1

Description : succinate dehydrogenase 2-2

Gene families : OG_01_0005670 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005670_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g02640.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g02640.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_85
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_126

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006099	tricarboxylic acid cycle	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	ISM	GOs from InterProScan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051537	2 iron, 2 sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006058	2Fe2S_fd_BS	ProSitePatterns	102	110
IPR036010	2Fe-2S_ferredoxin-like_sf	SUPERFAMILY	48	150
IPR001041	2Fe-2S_ferredoxin-type	ProSiteProfiles	49	141
IPR009051	Helical_ferredxn	Gene3D	151	258
IPR001041	2Fe-2S_ferredoxin-type	CDD	81	115
IPR017896	4Fe4S_Fe-S-bd	ProSiteProfiles	184	214
IPR004489	Succ_DH/fum_Rdtase_Fe-S	TIGRFAM	53	226
IPR017900	4Fe4S_Fe_S_CS	ProSitePatterns	194	205
IPR018271	Ribosomal_uS14_CS	ProSitePatterns	312	334
IPR025192	Succ_DH/fum_Rdtase_N	Pfam	50	155
IPR001209	Ribosomal_uS14	Pfam	296	349
IPR012675	Beta-grasp_dom_sf	Gene3D	41	150

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os08g02640.1

Expression Profile

Co-expression Networks

Functional Annotation