LOC_Os08g05710.1

Description : ATP binding cassette subfamily B19

Gene families : OG_01_0011937 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011937_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g05710.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g05710.1	No neighbors in network
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_22

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140359	ABC-type transporter activity	ISM	GOs from InterProScan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011527	ABC1_TM_dom	ProSiteProfiles	59	323
IPR011527	ABC1_TM_dom	Pfam	673	929
IPR011527	ABC1_TM_dom	Pfam	59	187
IPR036640	ABC1_TM_sf	Gene3D	37	184
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	989	1234
IPR011527	ABC1_TM_dom	ProSiteProfiles	669	954
IPR036640	ABC1_TM_sf	Gene3D	185	955
IPR017871	ABC_transporter-like_CS	ProSitePatterns	496	510
IPR027417	P-loop_NTPase	Gene3D	355	615
IPR036640	ABC1_TM_sf	SUPERFAMILY	40	337
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	359	593
IPR027417	P-loop_NTPase	Gene3D	979	1242
IPR017871	ABC_transporter-like_CS	ProSitePatterns	1128	1142
IPR039421	Type_1_exporter	PANTHER	31	181
IPR039421	Type_1_exporter	PANTHER	180	1240
IPR003439	ABC_transporter-like_ATP-bd	Pfam	376	524
IPR003439	ABC_transporter-like_ATP-bd	Pfam	1007	1156
IPR027417	P-loop_NTPase	SUPERFAMILY	346	594
IPR036640	ABC1_TM_sf	SUPERFAMILY	658	969
IPR027417	P-loop_NTPase	SUPERFAMILY	982	1236
IPR003593	AAA+_ATPase	SMART	1016	1211
IPR003593	AAA+_ATPase	SMART	384	570

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os08g05710.1

Expression Profile

Co-expression Networks

Functional Annotation