LOC_Os08g07790.1

Description : RNA-binding CRS1 / YhbY (CRM) domain-containing protein

Gene families : OG_01_0012405 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012405_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g07790.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g07790.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_350
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_96

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	ISM	GOs from InterProScan
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR035920	YhbY-like_sf	Gene3D	156	253
IPR035920	YhbY-like_sf	SUPERFAMILY	277	368
IPR001890	RNA-binding_CRM	ProSiteProfiles	275	371
IPR001890	RNA-binding_CRM	SMART	277	360
IPR001890	RNA-binding_CRM	SMART	157	242
IPR035920	YhbY-like_sf	SUPERFAMILY	156	252
IPR001890	RNA-binding_CRM	ProSiteProfiles	155	253
IPR001890	RNA-binding_CRM	Pfam	157	242
IPR001890	RNA-binding_CRM	Pfam	277	360
IPR044599	CAF1P_plant	PANTHER	23	401
IPR035920	YhbY-like_sf	Gene3D	277	376

No CAZYmes available for this sequence

External Links

No external refs found!