LOC_Os08g09800.1

Description : BED zinc finger ;hAT family dimerisation domain

Gene families : OG_01_0004209 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004209_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g09800.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g09800.1	No neighbors in network
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003700	DNA-binding transcription factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	ISM	GOs from InterProScan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036576	WRKY_dom_sf	Gene3D	47	119
IPR045259	DAYSLEEPER-like	PANTHER	222	853
IPR003657	WRKY_dom	Pfam	62	117
IPR036576	WRKY_dom_sf	SUPERFAMILY	55	118
IPR025525	hAT-like_transposase_RNase-H	Pfam	624	720
IPR003656	Znf_BED	ProSiteProfiles	227	282
IPR003656	Znf_BED	Pfam	230	273
IPR003657	WRKY_dom	SMART	60	118
IPR008906	HATC_C_dom	Pfam	767	849
IPR003657	WRKY_dom	ProSiteProfiles	62	119
IPR000772	Ricin_B_lectin	ProSiteProfiles	221	288
IPR036236	Znf_C2H2_sf	SUPERFAMILY	230	276
IPR012337	RNaseH-like_sf	SUPERFAMILY	364	851

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os08g09800.1

Expression Profile

Co-expression Networks

Functional Annotation