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  5. Sevir.4G300100.1

Sevir.4G300100.1


Description : Calcium-binding EF hand family protein


Gene families : OG_01_0001833 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001833_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G300100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G300100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_95


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011992 EF-hand-dom_pair SUPERFAMILY 372 471
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 432 444
IPR000261 EH_dom SMART 1 85
IPR000261 EH_dom SMART 379 474
IPR002048 EF_hand_dom ProSiteProfiles 419 454
IPR002048 EF_hand_dom SMART 423 451
IPR002048 EF_hand_dom SMART 38 66
IPR002048 EF_hand_dom SMART 4 32
IPR002048 EF_hand_dom SMART 389 417
IPR002048 EF_hand_dom Pfam 6 24
IPR000261 EH_dom ProSiteProfiles 386 466
IPR002048 EF_hand_dom ProSiteProfiles 1 35
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 47 59
IPR000261 EH_dom CDD 394 456
IPR011992 EF-hand-dom_pair SUPERFAMILY 4 84
IPR000261 EH_dom ProSiteProfiles 1 91
IPR000261 EH_dom CDD 5 71
IPR000261 EH_dom Pfam 380 466

No CAZYmes available for this sequence

No external refs found!