LOC_Os08g16390.1

Description : zinc knuckle (CCHC-type) family protein

Gene families : OG_01_0032353 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0032353_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g16390.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g16390.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_66
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_537

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036875	Znf_CCHC_sf	SUPERFAMILY	328	355
IPR001878	Znf_CCHC	SMART	304	320
IPR001878	Znf_CCHC	SMART	336	352
IPR001878	Znf_CCHC	Pfam	303	320
IPR001878	Znf_CCHC	ProSiteProfiles	305	320
IPR036875	Znf_CCHC_sf	SUPERFAMILY	292	324
IPR001878	Znf_CCHC	ProSiteProfiles	336	351

No CAZYmes available for this sequence

External Links

No external refs found!