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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0011153 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011153_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g19310.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g19310.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_201 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 184 | 218 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 616 | 806 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 406 | 518 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 519 | 615 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 159 | 307 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 308 | 405 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 220 | 254 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 641 | 675 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 466 | 500 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 254 | 303 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 501 | 549 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 324 | 373 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 677 | 723 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 183 | 233 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 605 | 654 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 325 | 359 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 571 | 605 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 290 | 324 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 360 | 394 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 567 | 595 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 469 | 498 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 255 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 714 | 746 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 327 | 360 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 573 | 607 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 471 | 501 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 257 | 290 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 643 | 673 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 503 | 536 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 362 | 389 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 222 | 255 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 609 | 641 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 680 | 711 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 187 | 215 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 538 | 572 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 606 | 640 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 536 | 570 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 676 | 710 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 711 | 745 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 501 | 535 |
No CAZYmes available for this sequence
| No external refs found! |