LOC_Os08g19890.1

Description : Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Gene families : OG_01_0007438 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007438_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g19890.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g19890.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_113
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_44

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	ISM	GOs from InterProScan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013087	Znf_C2H2_type	ProSitePatterns	101	121
IPR002156	RNaseH_domain	ProSiteProfiles	1230	1363
IPR012337	RNaseH-like_sf	SUPERFAMILY	1497	1655
IPR041588	Integrase_H2C2	Pfam	1433	1482
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	976	1347
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	1121	1164
IPR001584	Integrase_cat-core	Pfam	1501	1597
IPR036397	RNaseH_sf	Gene3D	1235	1372
IPR005162	Retrotrans_gag_dom	Pfam	452	542
IPR036397	RNaseH_sf	Gene3D	1492	1698
IPR001584	Integrase_cat-core	ProSiteProfiles	1497	1657
IPR013087	Znf_C2H2_type	ProSiteProfiles	99	126
IPR002156	RNaseH_domain	Pfam	1239	1355
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	1069	1116
IPR043128	Rev_trsase/Diguanyl_cyclase	Gene3D	1058	1068

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os08g19890.1

Expression Profile

Co-expression Networks

Functional Annotation