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  5. LOC_Os08g21660.1

LOC_Os08g21660.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0001503 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001503_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g21660.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g21660.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_34


Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
CC GO:0005852 eukaryotic translation initiation factor 3 complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR020472 G-protein_beta_WD-40_rep PRINTS 161 175
IPR020472 G-protein_beta_WD-40_rep PRINTS 67 81
IPR020472 G-protein_beta_WD-40_rep PRINTS 206 220
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 4 314
IPR001680 WD40_rpt ProSiteProfiles 6 47
IPR001680 WD40_rpt ProSiteProfiles 48 89
IPR019775 WD40_repeat_CS ProSitePatterns 161 175
IPR001680 WD40_rpt ProSiteProfiles 142 183
IPR001680 WD40_rpt ProSiteProfiles 187 228
IPR027525 eIF3i Hamap 1 326
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 1 326
IPR001680 WD40_rpt ProSiteProfiles 284 314
IPR001680 WD40_rpt SMART 41 80
IPR001680 WD40_rpt SMART 1 38
IPR001680 WD40_rpt SMART 222 262
IPR001680 WD40_rpt SMART 135 174
IPR001680 WD40_rpt SMART 177 219
IPR001680 WD40_rpt SMART 277 316
IPR001680 WD40_rpt Pfam 283 314
IPR001680 WD40_rpt Pfam 43 80
IPR001680 WD40_rpt Pfam 179 219
IPR001680 WD40_rpt Pfam 7 37
IPR001680 WD40_rpt Pfam 146 174
IPR019775 WD40_repeat_CS ProSitePatterns 67 81

No CAZYmes available for this sequence

No external refs found!