LOC_Os08g27824.1

Description : NOL1/NOP2/sun family protein

Gene families : OG_01_0004698 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004698_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g27824.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g27824.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_16

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR023267	RCMT	PANTHER	20	586
IPR023267	RCMT	PRINTS	496	512
IPR023267	RCMT	PRINTS	288	298
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	237	582
IPR015947	PUA-like_sf	SUPERFAMILY	146	250
IPR036974	PUA_sf	Gene3D	139	253
IPR001678	MeTrfase_RsmB-F_NOP2_dom	Pfam	434	528
IPR001678	MeTrfase_RsmB-F_NOP2_dom	Pfam	277	346
IPR018314	Fmu/NOL1/Nop2p_CS	ProSitePatterns	447	458
IPR001678	MeTrfase_RsmB-F_NOP2_dom	ProSiteProfiles	198	585

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os08g27824.1

Expression Profile

Co-expression Networks

Functional Annotation