LOC_Os08g28080.1

Description : clathrin adaptor complexes medium subunit family protein

Gene families : OG_01_0008429 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008429_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g28080.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g28080.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_80

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR025525	hAT-like_transposase_RNase-H	Pfam	136	225
IPR028565	MHD	ProSiteProfiles	595	837
IPR027059	Coatomer_dsu	PANTHER	396	837
IPR027059	Coatomer_dsu	PANTHER	281	353
IPR012337	RNaseH-like_sf	SUPERFAMILY	108	236
IPR028565	MHD	Pfam	595	835
IPR011012	Longin-like_dom_sf	SUPERFAMILY	284	454
IPR036168	AP2_Mu_C_sf	SUPERFAMILY	594	836

No CAZYmes available for this sequence

External Links

No external refs found!