LOC_Os08g33082.1

Description : DNA repair protein Rad4 family

Gene families : OG_01_0006492 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006492_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g33082.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g33082.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_299
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_226

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003684	damaged DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR018326	Rad4_beta-hairpin_dom1	SMART	557	608
IPR004583	DNA_repair_Rad4	PANTHER	47	876
IPR018327	BHD_2	SMART	610	674
IPR018328	Rad4_beta-hairpin_dom3	Pfam	681	753
IPR018327	BHD_2	Pfam	612	674
IPR042488	Rad4_BHD3_sf	Gene3D	687	759
IPR018328	Rad4_beta-hairpin_dom3	SMART	681	755
IPR018326	Rad4_beta-hairpin_dom1	Pfam	558	607
IPR018325	Rad4/PNGase_transGLS-fold	Pfam	434	552
IPR036985	Transglutaminase-like_sf	Gene3D	320	559
IPR036985	Transglutaminase-like_sf	Gene3D	143	304
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	160	571

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os08g33082.1

Expression Profile

Co-expression Networks

Functional Annotation