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  5. LOC_Os08g33700.1

LOC_Os08g33700.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0013644 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013644_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g33700.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g33700.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_385
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 265 493
IPR011990 TPR-like_helical_dom_sf Gene3D 97 264
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 293 327
IPR002885 Pentatricopeptide_rpt TIGRFAM 193 218
IPR002885 Pentatricopeptide_rpt TIGRFAM 295 329
IPR032867 DYW_dom Pfam 467 591
IPR002885 Pentatricopeptide_rpt Pfam 190 238
IPR002885 Pentatricopeptide_rpt Pfam 292 340
IPR002885 Pentatricopeptide_rpt Pfam 267 290
IPR002885 Pentatricopeptide_rpt Pfam 164 187
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 190 220

No CAZYmes available for this sequence

No external refs found!