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  5. LOC_Os08g33830.1

LOC_Os08g33830.1


Description : polypyrimidine tract-binding protein 1


Gene families : OG_01_0011794 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011794_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g33830.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g33830.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_280
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_22


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR034792 PTBPH1/PTBPH2_RRM1 CDD 15 95
IPR035979 RBD_domain_sf SUPERFAMILY 6 106
IPR034793 PTBPH1/PTBPH2_RRM2 CDD 109 203
IPR021790 PTBP1-like_RRM2 Pfam 242 320
IPR035979 RBD_domain_sf SUPERFAMILY 121 216
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 5 110
IPR000504 RRM_dom SMART 18 91
IPR000504 RRM_dom SMART 246 316
IPR000504 RRM_dom ProSiteProfiles 17 95
IPR035979 RBD_domain_sf SUPERFAMILY 248 341
IPR000504 RRM_dom Pfam 21 71
IPR034794 PTBPH1/PTBPH2_RRM3 CDD 242 338
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 241 346
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 111 220

No CAZYmes available for this sequence

No external refs found!