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  5. LOC_Os08g38610.1

LOC_Os08g38610.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0014654 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014654_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g38610.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g38610.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 378 412
IPR002885 Pentatricopeptide_rpt Pfam 445 472
IPR011990 TPR-like_helical_dom_sf Gene3D 80 231
IPR011990 TPR-like_helical_dom_sf Gene3D 394 614
IPR011990 TPR-like_helical_dom_sf Gene3D 232 338
IPR002885 Pentatricopeptide_rpt TIGRFAM 381 414
IPR002885 Pentatricopeptide_rpt TIGRFAM 184 214
IPR002885 Pentatricopeptide_rpt TIGRFAM 352 380
IPR002885 Pentatricopeptide_rpt TIGRFAM 279 312
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 182 216
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 277 311
IPR002885 Pentatricopeptide_rpt Pfam 182 226
IPR002885 Pentatricopeptide_rpt Pfam 277 323
IPR002885 Pentatricopeptide_rpt Pfam 378 425

No CAZYmes available for this sequence

No external refs found!