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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0016626 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016626_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g39130.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g39130.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_16 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 391 | 425 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 161 | 195 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 289 | 324 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 394 | 426 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 258 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 194 | 219 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 227 | 257 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 163 | 194 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 466 | 489 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 286 | 336 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 390 | 438 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 161 | 192 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 227 | 256 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 466 | 489 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 194 | 221 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 225 | 259 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 363 | 566 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 287 | 322 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 240 | 343 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 115 | 239 |
No CAZYmes available for this sequence
| No external refs found! |