LOC_Os08g39440.1

Description : RNA binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_01_0003845 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003845_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g39440.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g39440.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_164

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003727	single-stranded RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008143	poly(A) binding	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031440	regulation of mRNA 3'-end processing	None	Extended
BP	GO:0031441	negative regulation of mRNA 3'-end processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043488	regulation of mRNA stability	ISM	GOs from InterProScan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050686	negative regulation of mRNA processing	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
MF	GO:0070717	poly-purine tract binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1900364	negative regulation of mRNA polyadenylation	ISM	GOs from InterProScan
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1903312	negative regulation of mRNA metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR040366	Nab2/ZC3H14	PANTHER	559	708
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	486	635
IPR000504	RRM_dom	SMART	529	626
IPR002483	PWI_dom	Pfam	44	89
IPR000504	RRM_dom	ProSiteProfiles	528	630
IPR040366	Nab2/ZC3H14	PANTHER	12	536
IPR035979	RBD_domain_sf	SUPERFAMILY	561	658
IPR000504	RRM_dom	Pfam	561	622

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os08g39440.1

Expression Profile

Co-expression Networks

Functional Annotation