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  5. LOC_Os08g41240.1

LOC_Os08g41240.1


Description : BTB-POZ and MATH domain 1


Gene families : OG_01_0008628 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008628_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g41240.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g41240.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_24


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0016567 protein ubiquitination ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011333 SKP1/BTB/POZ_sf Gene3D 169 285
IPR008974 TRAF-like Gene3D 6 143
IPR002083 MATH/TRAF_dom CDD 5 140
IPR000210 BTB/POZ_dom Pfam 177 281
IPR000210 BTB/POZ_dom SMART 179 285
IPR045005 BPM1-6 PANTHER 13 347
IPR011333 SKP1/BTB/POZ_sf SUPERFAMILY 176 315
IPR000210 BTB/POZ_dom ProSiteProfiles 179 246

No CAZYmes available for this sequence

No external refs found!