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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0006781 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006781_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os08g41380.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os08g41380.1 | No neighbors in network |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_303 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 362 | 405 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 287 | 336 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 185 | 230 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 218 | 252 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 259 | 339 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 358 | 392 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 260 | 285 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 150 | 180 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 165 | 415 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 183 | 217 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 148 | 182 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 393 | 427 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 288 | 322 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 361 | 393 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 396 | 427 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 291 | 324 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 260 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 326 | 357 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 151 | 181 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 186 | 218 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 221 | 252 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 323 | 357 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 92 | 258 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 340 | 460 |
No CAZYmes available for this sequence
| No external refs found! |