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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0010790 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010790_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G018400.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G018400.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 296 | 330 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 506 | 540 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 228 | 258 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 369 | 398 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 160 | 188 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 265 | 291 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 331 | 365 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 298 | 332 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 334 | 366 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 614 | 646 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 369 | 402 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 403 | 436 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 578 | 612 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 473 | 507 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 544 | 577 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 159 | 188 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 508 | 542 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 228 | 262 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 438 | 469 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 251 | 357 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 471 | 517 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 295 | 344 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 575 | 622 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 400 | 449 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 226 | 260 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 156 | 190 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 261 | 295 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 430 | 500 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 501 | 570 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 571 | 643 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 358 | 429 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 541 | 575 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 611 | 645 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 576 | 610 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 366 | 400 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 538 | 568 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 68 | 250 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 471 | 505 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 401 | 435 |
No CAZYmes available for this sequence
| No external refs found! |