LOC_Os09g07780.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0015497 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015497_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g07780.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g07780.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_166
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_172

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	218	318
IPR011990	TPR-like_helical_dom_sf	Gene3D	35	119
IPR011990	TPR-like_helical_dom_sf	Gene3D	120	217
IPR002885	Pentatricopeptide_rpt	Pfam	442	464
IPR002885	Pentatricopeptide_rpt	Pfam	371	400
IPR002885	Pentatricopeptide_rpt	Pfam	69	99
IPR045215	PPR_prot_At1g15510	PANTHER	365	864
IPR045215	PPR_prot_At1g15510	PANTHER	259	366
IPR011990	TPR-like_helical_dom_sf	Gene3D	465	532
IPR011990	TPR-like_helical_dom_sf	Gene3D	319	426
IPR011990	TPR-like_helical_dom_sf	Gene3D	549	756
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	368	402
IPR002885	Pentatricopeptide_rpt	Pfam	267	314
IPR002885	Pentatricopeptide_rpt	Pfam	166	212
IPR002885	Pentatricopeptide_rpt	Pfam	570	616
IPR002885	Pentatricopeptide_rpt	Pfam	469	516
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	469	503
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	570	604
IPR045215	PPR_prot_At1g15510	PANTHER	30	265
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	166	200
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	267	301
IPR002885	Pentatricopeptide_rpt	TIGRFAM	645	668
IPR002885	Pentatricopeptide_rpt	TIGRFAM	608	635
IPR002885	Pentatricopeptide_rpt	TIGRFAM	474	504
IPR002885	Pentatricopeptide_rpt	TIGRFAM	371	403
IPR002885	Pentatricopeptide_rpt	TIGRFAM	269	303
IPR002885	Pentatricopeptide_rpt	TIGRFAM	572	605
IPR002885	Pentatricopeptide_rpt	TIGRFAM	168	201
IPR002885	Pentatricopeptide_rpt	TIGRFAM	69	103
IPR032867	DYW_dom	Pfam	744	867
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	67	101
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	236	266
IPR002885	Pentatricopeptide_rpt	Pfam	637	668

No CAZYmes available for this sequence

External Links

No external refs found!