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  5. LOC_Os09g07900.1

LOC_Os09g07900.1


Description : ubiquitin-protein ligase 1


Gene families : OG_01_0003743 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003743_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g07900.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g07900.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67


Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015940 UBA ProSiteProfiles 1213 1254
IPR000569 HECT_dom CDD 3285 3645
IPR009060 UBA-like_sf SUPERFAMILY 1203 1261
IPR011989 ARM-like Gene3D 187 391
IPR025527 HUWE1/Rev1_UBM Pfam 2597 2627
IPR025527 HUWE1/Rev1_UBM Pfam 2558 2586
IPR025527 HUWE1/Rev1_UBM Pfam 2634 2664
IPR016024 ARM-type_fold SUPERFAMILY 40 1454
IPR000569 HECT_dom ProSiteProfiles 3306 3647
IPR035983 Hect_E3_ubiquitin_ligase SUPERFAMILY 3268 3639
IPR015940 UBA SMART 1215 1253
IPR000569 HECT_dom SMART 3304 3647
IPR010309 E3_Ub_ligase_DUF908 Pfam 136 292
IPR000569 HECT_dom Pfam 3336 3646
IPR015940 UBA Pfam 1215 1251
IPR010314 E3_Ub_ligase_DUF913 Pfam 352 716
IPR003903 UIM_dom ProSiteProfiles 1260 1279

No CAZYmes available for this sequence

No external refs found!