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  5. LOC_Os09g12800.1

LOC_Os09g12800.1


Description : TBP-associated factor 15


Gene families : OG_01_0007253 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007253_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g12800.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g12800.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_275
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_38


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036443 Znf_RanBP2_sf SUPERFAMILY 222 261
IPR035979 RBD_domain_sf SUPERFAMILY 87 193
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 98 181
IPR036443 Znf_RanBP2_sf SUPERFAMILY 291 328
IPR001876 Znf_RanBP2 Pfam 230 259
IPR001876 Znf_RanBP2 Pfam 301 327
IPR000504 RRM_dom SMART 100 181
IPR001876 Znf_RanBP2 ProSitePatterns 233 254
IPR001876 Znf_RanBP2 ProSiteProfiles 229 260
IPR001876 Znf_RanBP2 ProSiteProfiles 298 327
IPR000504 RRM_dom ProSiteProfiles 99 185
IPR001876 Znf_RanBP2 ProSitePatterns 302 321
IPR001876 Znf_RanBP2 SMART 300 324
IPR001876 Znf_RanBP2 SMART 231 257
IPR000504 RRM_dom Pfam 101 178

No CAZYmes available for this sequence

No external refs found!