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  5. LOC_Os09g24640.1

LOC_Os09g24640.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016051 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016051_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g24640.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g24640.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_160


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 72 244
IPR011990 TPR-like_helical_dom_sf Gene3D 245 463
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 172 206
IPR002885 Pentatricopeptide_rpt Pfam 172 217
IPR002885 Pentatricopeptide_rpt Pfam 273 319
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR002885 Pentatricopeptide_rpt TIGRFAM 276 308
IPR002885 Pentatricopeptide_rpt TIGRFAM 146 171
IPR002885 Pentatricopeptide_rpt TIGRFAM 310 343
IPR002885 Pentatricopeptide_rpt TIGRFAM 174 207
IPR002885 Pentatricopeptide_rpt Pfam 146 171
IPR002885 Pentatricopeptide_rpt Pfam 347 371

No CAZYmes available for this sequence

No external refs found!