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  5. LOC_Os09g25320.1

LOC_Os09g25320.1


Description : related to ubiquitin 1


Gene families : OG_01_0004216 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004216_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g25320.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g25320.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_189
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_160


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 78 152
IPR038738 Nedd8-like CDD 79 152
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 1 76
IPR000626 Ubiquitin-like_dom SMART 1 72
IPR000626 Ubiquitin-like_dom SMART 77 148
IPR000626 Ubiquitin-like_dom ProSiteProfiles 77 152
IPR019954 Ubiquitin_CS ProSitePatterns 103 128
IPR000626 Ubiquitin-like_dom Pfam 79 150
IPR000626 Ubiquitin-like_dom Pfam 3 74
IPR019954 Ubiquitin_CS ProSitePatterns 27 52
IPR000626 Ubiquitin-like_dom ProSiteProfiles 1 76
IPR019956 Ubiquitin_dom PRINTS 32 52
IPR019956 Ubiquitin_dom PRINTS 53 74
IPR019956 Ubiquitin_dom PRINTS 11 31

No CAZYmes available for this sequence

No external refs found!