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  5. LOC_Os09g25420.1

LOC_Os09g25420.1


Description : RNA recognition motif (RRM)-containing protein


Gene families : OG_01_0013052 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013052_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g25420.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g25420.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_92


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036236 Znf_C2H2_sf SUPERFAMILY 298 341
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 114 148
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 305 339
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 173 207
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 249 283
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 374 408
IPR036236 Znf_C2H2_sf SUPERFAMILY 370 408
IPR036236 Znf_C2H2_sf SUPERFAMILY 231 284
IPR036236 Znf_C2H2_sf SUPERFAMILY 164 207
IPR013087 Znf_C2H2_type ProSitePatterns 310 332
IPR013087 Znf_C2H2_type ProSitePatterns 254 276
IPR036236 Znf_C2H2_sf SUPERFAMILY 114 151
IPR013087 Znf_C2H2_type SMART 308 332
IPR013087 Znf_C2H2_type SMART 377 401
IPR013087 Znf_C2H2_type SMART 117 141
IPR013087 Znf_C2H2_type SMART 252 276
IPR013087 Znf_C2H2_type SMART 176 200

No CAZYmes available for this sequence

No external refs found!