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  5. LOC_Os09g25430.1

LOC_Os09g25430.1


Description : putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain


Gene families : OG_01_0013052 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013052_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g25430.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g25430.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_3


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR013087 Znf_C2H2_type SMART 205 229
IPR013087 Znf_C2H2_type SMART 151 175
IPR013087 Znf_C2H2_type SMART 288 312
IPR013087 Znf_C2H2_type SMART 98 122
IPR013087 Znf_C2H2_type SMART 256 280
IPR036236 Znf_C2H2_sf SUPERFAMILY 143 182
IPR036236 Znf_C2H2_sf SUPERFAMILY 91 130
IPR036236 Znf_C2H2_sf SUPERFAMILY 288 321
IPR013087 Znf_C2H2_type ProSitePatterns 258 280
IPR036236 Znf_C2H2_sf SUPERFAMILY 189 235
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 95 129
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 202 236
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 253 287
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 288 319
IPR003604 Matrin/U1-like-C_Znf_C2H2 SMART 148 182
IPR036236 Znf_C2H2_sf SUPERFAMILY 247 284
IPR013087 Znf_C2H2_type ProSitePatterns 207 229

No CAZYmes available for this sequence

No external refs found!