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  5. LOC_Os09g28400.1

LOC_Os09g28400.1


Description : alpha-amylase-like


Gene families : OG_01_0000440 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000440_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g28400.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_113


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004556 alpha-amylase activity ISM GOs from InterProScan
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0043169 cation binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012850 A-amylase_bs_C Pfam 369 427
IPR013775 A-amylase_pln PIRSF 2 429
IPR012850 A-amylase_bs_C SMART 368 428
IPR013780 Glyco_hydro_b Gene3D 372 429
IPR006047 Glyco_hydro_13_cat_dom SMART 29 367
IPR006046 Alpha_amylase PRINTS 201 212
IPR006046 Alpha_amylase PRINTS 109 120
IPR006046 Alpha_amylase PRINTS 305 317
IPR006047 Glyco_hydro_13_cat_dom Pfam 57 348
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 19 370

No CAZYmes available for this sequence

No external refs found!